Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs62070327 chr16:89583610 C/T 0.000192 177 26.78 25.4 19.53 KM Plot
PCPG rs62076865 chr17:36948071 A/G 6.6E-8 178 25.17 36.53 24.53 KM Plot
PCPG rs62080680 chr17:53779133 C/T 8.79E-5 176 25.87 20.13 17.27 KM Plot
PCPG rs62085145 chr17:74700126 G/A 0.000168 177 25.97 19.57 13.5 KM Plot
PCPG rs62085155 chr17:74705892 A/C 0.00016 175 26.27 14.35 13.5 KM Plot
PCPG rs62110407 chr19:52785755 G/A 0.00035 173 25.53 28.3 18.2 KM Plot
PCPG rs62137778 chr19:19682541 A/G 0.000314 178 25.77 26.05 23.48 KM Plot
PCPG rs62186369 chr2:242191140 A/G 5.62E-5 173 24.17 32.92 9.13 KM Plot
PCPG rs62191740 chr2:242515516 C/T 5.72E-11 176 25.87 24.85 10.3 KM Plot
PCPG rs62192961 chr2:242519719 G/A 4.22E-5 177 25.87 25.67 20.2 KM Plot
PCPG rs62192963 chr2:242520800 G/A 4.19E-11 178 25.87 24.85 10.3 KM Plot
PCPG rs62192999 chr2:242534467 C/T 4.16E-5 177 25.87 26.47 20.28 KM Plot
PCPG rs62193000 chr2:242534709 C/T 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs62193001 chr2:242534748 G/A 4.39E-5 177 25.87 29.57 19.75 KM Plot
PCPG rs62193002 chr2:242534781 A/G 4.39E-5 177 25.87 29.57 19.75 KM Plot